PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10034208
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family LBD
Protein Properties Length: 220aa    MW: 23605.6 Da    PI: 7.265
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10034208genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260119.32.2e-37341341100
       DUF260   1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +CaaCk+lrr+Ca++ C+++pyf   +p+kfa+vhk+FGasnv+k+l ++ e++r da++slvyeA +r+rdPv+G+vg i+ lq+q+++l++ela+l
  Lus10034208  34 PCAACKLLRRRCAAQeCPFSPYFSPLEPHKFAYVHKVFGASNVSKMLMEVGESQRWDAANSLVYEASVRLRDPVHGCVGAISLLQHQIHSLESELAAL 131
                  7***********8655********************************************************************************99 PP

       DUF260  98 kee 100
                  ++e
  Lus10034208 132 RAE 134
                  987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.70633135IPR004883Lateral organ boundaries, LOB
PfamPF031954.2E-3734132IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MMEKSDDAAE RVMMLSSSSS SQAQASGGLN TITPCAACKL LRRRCAAQEC PFSPYFSPLE  60
PHKFAYVHKV FGASNVSKML MEVGESQRWD AANSLVYEAS VRLRDPVHGC VGAISLLQHQ  120
IHSLESELAA LRAEILRHRY NAAAATSSPS TMDIVNTTTT SPMIINSPPP PVDFSHDARG  180
HGPVLLPPIT LSTASSSSSS PSNRYSSISN NDHNIPFYG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010921102.11e-65PREDICTED: LOB domain-containing protein 15
RefseqXP_008456927.13e-65PREDICTED: LOB domain-containing protein 15
SwissprotQ9AT611e-64LBD13_ARATH; LOB domain-containing protein 13
TrEMBLW5AMV22e-70W5AMV2_WHEAT; Uncharacterized protein
STRINGMLOC_56075.13e-65(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22983486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30340.15e-53LOB domain-containing protein 13